code_saturne User's Forum

Hello,

my config: Red hat 2.6.18-194.el5 64 bits whit Code_saturne 2.01
in virtual machine VMWARE.

When i clik on " check mesh", i have this problem:
 

.--------------------------------.
| |
| Fin normale du Préprocesseur |
| |
`--------------------------------'
 
 
/usr/local/bin/cs_solver: symbol lookup error: /usr/local/lib/libfvm.so.0: undefined symbol: ompi_mpi_info_null

 
how can i resolv?
 

Hello,
What is the path of your MPI (Open MPI) install used with Code_Saturne ? Do you have multiple MPI installs ?
Best regards,
  Yvan

Hello,
the path of MPI:
CS_MPI_PATH=/usr/lib/openmpi/1.4-gcc/bin
2 installations of MPI, one with the installer of code_saturne 1.33 and another with code_saturne 2.0.1
 
Best regards,
Eric

Hello,

I suspect the MPI library loaded by Code_Saturne 2.0.1 is not the one with which it was compiled. This may happen if you have an LD_LIBRARY_PATH set for Code_Saturne 1.3, or if its version of OpenMPI is in system paths and 2.0's is not.

You should try to

export LD_LIBRARY_PATH=/usr/lib/openmpi/1.4-gcc/lib:$LD_LIBRARY_PATH

in your .profile file to see if it solves the issue.

Best regards,

  Yvan

Hello,

no change with:

export LD_LIBRARY_PATH=/usr/lib/openmpi/1.4-gcc/lib:$LD_LIBRARY_PATH

I see in file RESU/summary.xxxx, no define for   CS_MPI_PATH:   ??

 Kernel          :  /usr/local
 
    Preprocessor    :  /usr/local/bin
 
    ------------------------------------------------  
 
    HOMARD          :
 
    ------------------------------------------------  
 
    CS_MPI_PATH     :
 
    PATH            :  /opt/syrthes3.4.3/bin:/opt/syrthes3.4.3/bin/Linux_x86_64:/opt/aster/public/hdf5-1.6.9/bin:/opt/aster/public/med-2.3.6/bin:/opt/metis-4
 
.0:/opt/Saturne_1.3.3/Noyau/ncs-1.3.3/bin:/opt/Saturne_1.3.3/Enveloppe/ecs-1.3.3/bin:/opt/syrthes3.4.3/bin:/opt/syrthes3.4.3/bin/Linux_x86_64:/opt/aster/publ
 
ic/hdf5-1.6.9/bin:/opt/aster/public/med-2.3.6/bin:/opt/metis-4.0:/opt/Saturne_1.3.3/Noyau/ncs-1.3.3/bin:/opt/Saturne_1.3.3/Enveloppe/ecs-1.3.3/bin:/usr/kerbe
 
ros/sbin:/usr/kerberos/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/X11R6/bin:/root/bin

Best regards,

Eric
 
 

Hello,
Do you have the config.log files from the build directories of the FVM library and of the NCS kernel ?
Best regards,
  Yvan

Hello,
Add in attachment....
Best regards,
Eric

Hello,

What is the output of:

ldd /usr/local/lib/libfvm.so.0

and of:

nm /usr/local/lib/libfvm.so.0 | grep MPI

and finally:

ls /usr/local/lib/lib*mpi.* /usr/lib/lib*mpi.*

Best regards,

  Yvan