Coupling Code_Saturne/Syrthes: SIGTERM signal (termination) received
Posted: Thu Nov 03, 2022 3:36 pm
Hello
I am trying to do a coupling between code_sturne and syrthes. Burt when running, I have the following error message at the Starting calculation:
Starting calculation
--------------------
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI COMMUNICATOR 3 SPLIT FROM 0
with errorcode 1.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
[hotcell:124583] 1 more process has sent help message help-mpi-api.txt / mpi-abort
[hotcell:124583] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
solver script exited with status 1.
Error running the coupled calculation.
Either code_saturne or SYRTHES may have failed.
Check code_saturne log (listing) and SYRTHES log (syrthes.log)
for details, as well as error* files.
Post-calculation operations
---------------------------
Error in calculation stage.
In the fluid error file, I have this message:
SIGTERM signal (termination) received.
--> computation interrupted by environment.
Call stack:
1: 0x7f2fbe956027 <epoll_wait+0x57> (libc.so.6)
2: 0x7f2fa917ea29 <ucs_event_set_wait+0x99> (libucs.so.0)
3: 0x7f2fa95e23eb <uct_tcp_iface_progress+0x7b> (libuct.so.0)
4: 0x7f2fa983cada <ucp_worker_progress+0x2a> (libucp.so.0)
5: 0x7f2fbdb3bf94 <opal_progress+0x34> (libopen-pal.so.40)
6: 0x7f2fbdb429d5 <ompi_sync_wait_mt+0xb5> (libopen-pal.so.40)
7: 0x7f2fbf095659 <ompi_request_default_wait+0x1e9> (libmpi.so.40)
8: 0x7f2fbf0c6a58 <PMPI_Intercomm_create+0x3a8> (libmpi.so.40)
9: 0x7f2fc126cf0a <ple_coupling_mpi_intracomm_create+0xda> (libple.so.2)
10: 0x7f2fc16266b1 <cs_syr4_coupling_init_comm+0x141> (libsaturne-7.0.so)
11: 0x7f2fc1628d49 <cs_syr_coupling_all_init+0x739> (libsaturne-7.0.so)
12: 0x7f2fc25e853c <main+0x27c> (libcs_solver-7.0.so)
13: 0x7f2fbe860d85 <__libc_start_main+0xe5> (libc.so.6)
14: 0x40094e <_start+0x2e> (cs_solver)
End of stack
Attached are the listing files (for fluid and solid).
Does anyone have an idea how to get through this? Any help would be greatly appreciated.
I am trying to do a coupling between code_sturne and syrthes. Burt when running, I have the following error message at the Starting calculation:
Starting calculation
--------------------
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI COMMUNICATOR 3 SPLIT FROM 0
with errorcode 1.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
[hotcell:124583] 1 more process has sent help message help-mpi-api.txt / mpi-abort
[hotcell:124583] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
solver script exited with status 1.
Error running the coupled calculation.
Either code_saturne or SYRTHES may have failed.
Check code_saturne log (listing) and SYRTHES log (syrthes.log)
for details, as well as error* files.
Post-calculation operations
---------------------------
Error in calculation stage.
In the fluid error file, I have this message:
SIGTERM signal (termination) received.
--> computation interrupted by environment.
Call stack:
1: 0x7f2fbe956027 <epoll_wait+0x57> (libc.so.6)
2: 0x7f2fa917ea29 <ucs_event_set_wait+0x99> (libucs.so.0)
3: 0x7f2fa95e23eb <uct_tcp_iface_progress+0x7b> (libuct.so.0)
4: 0x7f2fa983cada <ucp_worker_progress+0x2a> (libucp.so.0)
5: 0x7f2fbdb3bf94 <opal_progress+0x34> (libopen-pal.so.40)
6: 0x7f2fbdb429d5 <ompi_sync_wait_mt+0xb5> (libopen-pal.so.40)
7: 0x7f2fbf095659 <ompi_request_default_wait+0x1e9> (libmpi.so.40)
8: 0x7f2fbf0c6a58 <PMPI_Intercomm_create+0x3a8> (libmpi.so.40)
9: 0x7f2fc126cf0a <ple_coupling_mpi_intracomm_create+0xda> (libple.so.2)
10: 0x7f2fc16266b1 <cs_syr4_coupling_init_comm+0x141> (libsaturne-7.0.so)
11: 0x7f2fc1628d49 <cs_syr_coupling_all_init+0x739> (libsaturne-7.0.so)
12: 0x7f2fc25e853c <main+0x27c> (libcs_solver-7.0.so)
13: 0x7f2fbe860d85 <__libc_start_main+0xe5> (libc.so.6)
14: 0x40094e <_start+0x2e> (cs_solver)
End of stack
Attached are the listing files (for fluid and solid).
Does anyone have an idea how to get through this? Any help would be greatly appreciated.