Hi There,
New to Syrthes. I installed Syrthes4.3.0 on Ubuntu 14.04 and everything seems to be working (except I did get an error during syrthes-post build, see attachement). The plan is to couple syrthes with Code_Saturne.
I have run the cases in serial and in the POST directory I find the .rdt files which I can view in Paraview.
If I run in parallel I do not get any errors and the simulation runs fine but now in the POST directory I can only find the last result file (no .rdt files). The last result is correct but I am wondering where are the .rdt files?
Are they stored in a different place or do a manually reconstruct them from the command line? As the result is correct it looks like Syrthes does manage to reconstruct the result into a single file but it does so only for the final result.
Thanks
Karl
Syrthes parallel results
-
Yvan Fournier
- Posts: 4210
- Joined: Mon Feb 20, 2012 3:25 pm
Re: Syrthes parallel results
Helllo,
Do you have the same issue in serial mode ? It is not clear whether the issue is due to parallelism.
Also, I do not use Syrthes very often, so I am not sure, but there might be keywords handling output frequency/which output is converted.
You log file seems incomplete, and it is not clear whether is is a compilation or execution issue.
Regards,
Yvan
Do you have the same issue in serial mode ? It is not clear whether the issue is due to parallelism.
Also, I do not use Syrthes very often, so I am not sure, but there might be keywords handling output frequency/which output is converted.
You log file seems incomplete, and it is not clear whether is is a compilation or execution issue.
Regards,
Yvan
-
karlv
Re: Syrthes parallel results
Hello Yvan,
No I do not have this problem in serial. Please see the attached listing files for cas3disk3d. I have asked for 5 steps and results for every time step. As I said it runs fine in parallel but only writes out the last result as shown in the listing.
I have also attached all my install log files. all of them seem to have the same "mkdir" issue. Maybe this is not an issue after all.
Then I have also noticed that even though I specify in the setup.ini file that blas should be installed in the setup file created during installation it says that blas should not be installed.
Regards,
Karl
No I do not have this problem in serial. Please see the attached listing files for cas3disk3d. I have asked for 5 steps and results for every time step. As I said it runs fine in parallel but only writes out the last result as shown in the listing.
I have also attached all my install log files. all of them seem to have the same "mkdir" issue. Maybe this is not an issue after all.
Then I have also noticed that even though I specify in the setup.ini file that blas should be installed in the setup file created during installation it says that blas should not be installed.
Regards,
Karl
- Attachments
-
- setup.ini
- (4.41 KiB) Downloaded 590 times
-
- listing_serial.log
- (14.34 KiB) Downloaded 544 times
-
- listing_parallel.log
- (16.67 KiB) Downloaded 588 times
-
karlv
Re: Syrthes parallel results
and some more log files
- Attachments
-
- install_log_files.zip
- (25.16 KiB) Downloaded 536 times
-
- setup.log.log
- (3.23 KiB) Downloaded 516 times
-
Yvan Fournier
- Posts: 4210
- Joined: Mon Feb 20, 2012 3:25 pm
Re: Syrthes parallel results
Hello,
I'm not sure, but I suspect the script might not reassemble (from parallel to serial) intermediate files
(as you log files seem OK at least on a quick read)
I'm out of office this week, so I can't ask the Syrthes team to check either...
I'll try to check in a few days.
If anybody else who runs Syrthes has encountered this issue (or uses this feature), I encourage you to participate and help answer this thread...
Regards,
Yvan
I'm not sure, but I suspect the script might not reassemble (from parallel to serial) intermediate files
(as you log files seem OK at least on a quick read)
I'm out of office this week, so I can't ask the Syrthes team to check either...
I'll try to check in a few days.
If anybody else who runs Syrthes has encountered this issue (or uses this feature), I encourage you to participate and help answer this thread...
Regards,
Yvan