Code Saturn 6.2 - libhdf5.so.103 error - no such file or directory

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Sameer
Posts: 9
Joined: Mon Nov 30, 2020 1:38 pm

Code Saturn 6.2 - libhdf5.so.103 error - no such file or directory

Post by Sameer »

./cs_solver: error while loading shared libraries: libhdf5.so.103: cannot open shared object file: No such file or directory

I have install 6.2 version and on my first run as per youtube Cavity Reynolds1000 example face with above error on running the study.

HDF5 folder has libhdf5.so.103 but what is solution.

Requesting Guidance.

Thanks in advance.
Sameer
Posts: 9
Joined: Mon Nov 30, 2020 1:38 pm

Re: Code Saturn 6.2 - libhdf5.so.103 error - no such file or directory

Post by Sameer »

Also, on Starting code_saturne gui from terminal have below warnings, it is OK or some error..

scs@scs-desktop:~/Desktop/CS-1/Square_cavity/Reynolds1000/DATA$ code_saturne gui
(python3:1493): dbind-WARNING **: 17:59:43.820: Error retrieving accessibility bus address: org.freedesktop.DBus.Error.ServiceUnknown: The name org.a11y.Bus was not provided by any .service files
QApplication: invalid style override passed, ignoring it.
started: /home/scs/Code_Saturne/6.2.0/code_saturne-6.2.0/arch/Linux_x86_64/bin/code_saturne run
finished with exit code 1
Gtk-Message: 18:29:06.272: GtkDialog mapped without a transient parent. This is discouraged.

(python3:2078): dbind-WARNING **: 18:29:18.286: Error retrieving accessibility bus address: org.freedesktop.DBus.Error.ServiceUnknown: The name org.a11y.Bus was not provided by any .service files
QApplication: invalid style override passed, ignoring it.
Traceback (most recent call last):
File "/home/scs/Code_Saturne/6.2.0/code_saturne-6.2.0/arch/Linux_x86_64/bin/code_saturne", line 85, in <module>
retcode = cs.execute()
File "/home/scs/Code_Saturne/6.2.0/code_saturne-6.2.0/arch/Linux_x86_64/lib/python3.6/site-packages/code_saturne/cs_script.py", line 94, in execute
return self.commands[command](options)
File "/home/scs/Code_Saturne/6.2.0/code_saturne-6.2.0/arch/Linux_x86_64/lib/python3.6/site-packages/code_saturne/cs_script.py", line 165, in trackcvg
return cs_trackcvg.main(options, self.package)
File "/home/scs/Code_Saturne/6.2.0/code_saturne-6.2.0/arch/Linux_x86_64/lib/python3.6/site-packages/code_saturne/cs_trackcvg.py", line 140, in main
from code_saturne.trackcvg.MainView import MainView
File "/home/scs/Code_Saturne/6.2.0/code_saturne-6.2.0/arch/Linux_x86_64/lib/python3.6/site-packages/code_saturne/trackcvg/MainView.py", line 75, in <module>
import matplotlib
ModuleNotFoundError: No module named 'matplotlib'
Tsubasa
Posts: 97
Joined: Fri Nov 20, 2020 4:09 am

Re: Code Saturn 6.2 - libhdf5.so.103 error - no such file or directory

Post by Tsubasa »

I faced similar problem in the past.

Before lunching code saturne, can you try to run
export LD_LIBRARY_PATH="/usr/local/lib:$LD_LIBRARY_PATH",
and try again simulation as usual.
Sameer
Posts: 9
Joined: Mon Nov 30, 2020 1:38 pm

Re: Code Saturn 6.2 - libhdf5.so.103 error - no such file or directory

Post by Sameer »

Thank you Brother it worked very well.
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