Error with the solver on a cluster installation

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grubbers
Posts: 3
Joined: Sun Feb 12, 2023 1:36 pm

Error with the solver on a cluster installation

Post by grubbers »

Hello everyone,
I have to use Code Saturn on the cluster of my university for my final work, and I encountered some issues I didn't get when using it on my personal computer. The first issue I got was that I couldn't install the CGNS package, even if it is not a big deal as I am using the MED format for my mesh.
The second and most troublesome issue is that when I launch the software, the solver crash and send me this error :

Local case configuration:

Date: Sun 12 Feb 2023 12:06:46 PM CET
System: Linux 3.10.0-1160.71.1.el7.x86_64
Machine: lm3-w080.cluster
Processor: model name : Intel(R) Xeon(R) Gold 5118 CPU @ 2.30GHz
Memory: 95346 MB
User: grubbers
Directory: /home/users/g/r/grubbers/CFD/mesh_3_dechets/case1/RESU/20230212-1206
OpenMP threads: 1
Processors/node: 1

Compilers used for build:
C compiler: gcc (GCC) 5.4.0
C++ compiler: g++ (GCC) 5.4.0
Fortran compiler: GNU Fortran (GCC) 11.2.0

MPI version 3.1 (Open MPI 4.1.4)

I/O read method: standard input and output, serial access
I/O write method: standard input and output, serial access

External libraries for partitioning:
ParMETIS 4.0.3
PT-SCOTCH 6.1.0



/home/users/g/r/grubbers/Code_Saturne/code_saturne-7.0.5/src/base/cs_base_fortran.c:599: Fatal error.

Error opening file "run_solver.log" from Fortran.


Call stack:
1: 0x2aaaaade3537 <cs_base_fortran_bft_printf_to_f+0xf7> (libsaturne-7.0.so)
2: 0x2aaaaaad8d8e <main+0x55e> (libcs_solver-7.0.so)
3: 0x2aaaacdec555 <__libc_start_main+0xf5> (libc.so.6)
4: 0x401af9 <> (cs_solver)
End of stack

I am not an expert in Fortran so I have absolutely no idea on what is happening, I guess I probably didn't install Code_Saturne correctly, but I have no idea on how to fix this. The code Saturne version is 7.0.5.

Thanks in advance for your help
Yvan Fournier
Posts: 4070
Joined: Mon Feb 20, 2012 3:25 pm

Re: Error with the solver on a cluster installation

Post by Yvan Fournier »

Hello,

This is a strange error. Is the run_solver.log file present in tohe run directory ? It should have been created by the C part of the code (if I remember correctly) before reaching the error, but if this is not the case it may provide additional info.

Also, does you environment source some specific files or environment modules ?
Can you post the output of "ldd cs_solver" in the execution directory (load environment modules that were loaded at code_saturne "configure" time if necessary.

Also, you have very old C and C++ compilers, bit a very recent version of Gfortran. Could you use MPI wrappers allowing you to have a recnt version of gcc and g++ also (ideally, the same version as gfortran) ? This might be related to the crash.

Best regards,

Yvan
grubbers
Posts: 3
Joined: Sun Feb 12, 2023 1:36 pm

Re: Error with the solver on a cluster installation

Post by grubbers »

Hello,
Yes, the run_solver.log is present. I forgot to mention it, but the error I paste on my precedent message came from this log actually.
The environment also gave me another file called compile.log, which contains the following :


/home/users/g/r/grubbers/CFD/mesh_3_dechets/case1/RESU/20230212-1206/src/cs_meg_initialization.c: In function ‘cs_meg_initialization’:
/home/users/g/r/grubbers/CFD/mesh_3_dechets/case1/RESU/20230212-1206/src/cs_meg_initialization.c:48:17: warning: unused variable ‘c_id’ [-Wunused-variable]
cs_lnum_t c_id = zone->elt_ids[e_id];
^
/home/users/g/r/grubbers/CFD/mesh_3_dechets/case1/RESU/20230212-1206/src/cs_meg_initialization.c:65:17: warning: unused variable ‘c_id’ [-Wunused-variable]
cs_lnum_t c_id = zone->elt_ids[e_id];
^
/opt/sw/arch/easybuild/2021b/software/OpenMPI/4.1.2-GCC-11.2.0/bin/mpicc -DHAVE_CONFIG_H -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/include/code_saturne -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/med-4.1.0/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/hdf5-1.10.6/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/parmetis-4.0.3/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/scotch-6.1.0/arch/Linux_x86_64/include -DOMPI_SKIP_MPICXX -D_POSIX_C_SOURCE=200809L -DNDEBUG -funsigned-char -W -Wall -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wnested-externs -Wunused -Wfloat-equal -Werror=implicit-function-declaration -fdiagnostics-color=auto -Werror=format-security -fopenmp -funroll-loops -O2 -Wuninitialized -fexcess-precision=fast -c /home/users/g/r/grubbers/CFD/mesh_3_dechets/case1/RESU/20230212-1206/src/cs_meg_source_terms.c
/opt/sw/arch/easybuild/2021b/software/OpenMPI/4.1.2-GCC-11.2.0/bin/mpicc -DHAVE_CONFIG_H -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/include/code_saturne -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/med-4.1.0/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/hdf5-1.10.6/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/parmetis-4.0.3/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/scotch-6.1.0/arch/Linux_x86_64/include -DOMPI_SKIP_MPICXX -D_POSIX_C_SOURCE=200809L -DNDEBUG -funsigned-char -W -Wall -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wnested-externs -Wunused -Wfloat-equal -Werror=implicit-function-declaration -fdiagnostics-color=auto -Werror=format-security -fopenmp -funroll-loops -O2 -Wuninitialized -fexcess-precision=fast -c /home/users/g/r/grubbers/CFD/mesh_3_dechets/case1/RESU/20230212-1206/src/cs_meg_volume_function.c
/opt/sw/arch/easybuild/2021b/software/OpenMPI/4.1.2-GCC-11.2.0/bin/mpicc -DHAVE_CONFIG_H -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/include/code_saturne -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/med-4.1.0/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/hdf5-1.10.6/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/parmetis-4.0.3/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/scotch-6.1.0/arch/Linux_x86_64/include -DOMPI_SKIP_MPICXX -D_POSIX_C_SOURCE=200809L -DNDEBUG -funsigned-char -W -Wall -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wnested-externs -Wunused -Wfloat-equal -Werror=implicit-function-declaration -fdiagnostics-color=auto -Werror=format-security -fopenmp -funroll-loops -O2 -Wuninitialized -fexcess-precision=fast -c /home/users/g/r/grubbers/CFD/mesh_3_dechets/case1/RESU/20230212-1206/src/cs_user_head_losses.c
/opt/sw/arch/easybuild/2021b/software/OpenMPI/4.1.2-GCC-11.2.0/bin/mpicc -DHAVE_CONFIG_H -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/include/code_saturne -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/med-4.1.0/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/hdf5-1.10.6/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/parmetis-4.0.3/arch/Linux_x86_64/include -I/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/scotch-6.1.0/arch/Linux_x86_64/include -DOMPI_SKIP_MPICXX -D_POSIX_C_SOURCE=200809L -DNDEBUG -funsigned-char -W -Wall -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wnested-externs -Wunused -Wfloat-equal -Werror=implicit-function-declaration -fdiagnostics-color=auto -Werror=format-security -fopenmp -funroll-loops -O2 -Wuninitialized -fexcess-precision=fast -c /home/users/g/r/grubbers/CFD/mesh_3_dechets/case1/RESU/20230212-1206/src/cs_meg_initialization.c
/opt/sw/arch/easybuild/2021b/software/OpenMPI/4.1.2-GCC-11.2.0/bin/mpicc -o /home/users/g/r/grubbers/CFD/mesh_3_dechets/case1/RESU/20230212-1206/cs_solver cs_meg_source_terms.o cs_meg_volume_function.o cs_user_head_losses.o cs_meg_initialization.o -lcs_solver -L/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/lib -L/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/med-4.1.0/arch/Linux_x86_64/lib -L/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/hdf5-1.10.6/arch/Linux_x86_64/lib -L/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/parmetis-4.0.3/arch/Linux_x86_64/lib -L/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/scotch-6.1.0/arch/Linux_x86_64/lib -O -Wl,-export-dynamic -fopenmp -lsaturne -lple -lmedC -lhdf5 -lparmetis -lmetis -lptscotch -lscotch -lz -lz -ldl -L/opt/sw/arch/easybuild/2016b/software/Qt5/5.7.0-foss-2016b/lib64 -L/opt/cecisw/arch/easybuild/2016b/software/nettle/3.2-foss-2016b/lib64 -L/opt/cecisw/arch/easybuild/2016b/software/libffi/3.2.1-foss-2016b/lib64 -L/opt/cecisw/arch/easybuild/2016b/software/GCCcore/5.4.0/lib64 -L/opt/sw/arch/easybuild/2021b/software/GCCcore/11.2.0/lib/gcc/x86_64-pc-linux-gnu/11.2.0 -L/opt/sw/arch/easybuild/2021b/software/GCCcore/11.2.0/lib64 -L/lib64 -L/usr/lib64 -L/opt/sw/arch/easybuild/2016b/software/Qt5/5.7.0-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/libGLU/9.0.0-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/Mesa/12.0.2-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/LLVM/3.8.1-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/libdrm/2.4.70-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/X11/20160819-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/fontconfig/2.12.1-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/expat/2.2.0-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/freetype/2.6.5-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/libpng/1.6.24-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/GLib/2.49.5-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/PCRE/8.39-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/gettext/0.19.8-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/libxml2/2.9.4-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/XZ/5.2.2-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/Python/2.7.12-foss-2016b/lib/python2.7/site-packages/numpy-1.11.1-py2.7-linux-x86_64.egg/numpy/core/lib -L/opt/cecisw/arch/easybuild/2016b/software/Python/2.7.12-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/libffi/3.2.1-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/GMP/6.1.1-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/Tk/8.6.5-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/SQLite/3.13.0-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/Tcl/8.6.5-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/libreadline/6.3-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/ncurses/6.0-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/zlib/1.2.8-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/bzip2/1.0.6-foss-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib -L/opt/cecisw/arch/easybuild/2016b/software/FFTW/3.3.4-gompi-2016b/lib -L/opt/cecisw/arch/easybuild/2016b/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib -L/opt/cecisw/arch/easybuild/2016b/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib -L/opt/cecisw/arch/easybuild/2016b/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib -L/opt/cecisw/arch/easybuild/2016b/software/numactl/2.0.11-GCC-5.4.0-2.26/lib -L/opt/cecisw/arch/easybuild/2016b/software/binutils/2.26-GCCcore-5.4.0/lib -L/opt/cecisw/arch/easybuild/2016b/software/GCCcore/5.4.0/lib -L/opt/sw/arch/easybuild/2021b/software/GCCcore/11.2.0/lib -lgfortran -lquadmath -lm -Wl,-rpath -Wl,/opt/cecisw/arch/easybuild/2016b/software/GCCcore/5.4.0/lib64/../lib64/opt/cecisw/arch/easybuild/2016b/software/GCCcore/5.4.0/lib64/../lib64:/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/lib:/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/med-4.1.0/arch/Linux_x86_64/lib:/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/hdf5-1.10.6/arch/Linux_x86_64/lib:/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/parmetis-4.0.3/arch/Linux_x86_64/lib:/home/ucl/tfl/grubbers/Code_Saturne/7.0.5/scotch-6.1.0/arch/Linux_x86_64/lib:/opt/sw/arch/easybuild/2016b/software/Qt5/5.7.0-foss-2016b/lib/../lib64:/opt/cecisw/arch/easybuild/2016b/software/nettle/3.2-foss-2016b/lib64/../lib64:/opt/cecisw/arch/easybuild/2016b/software/libffi/3.2.1-foss-2016b/lib64/../lib64:/opt/cecisw/arch/easybuild/2016b/software/libffi/3.2.1-foss-2016b/lib/../lib64:/opt/cecisw/arch/easybuild/2016b/software/GCCcore/5.4.0/lib64/../lib64:/opt/cecisw/arch/easybuild/2016b/software/GCCcore/5.4.0/lib/../lib64:/opt/sw/arch/easybuild/2021b/software/GCCcore/11.2.0/lib/gcc/x86_64-pc-linux-gnu/11.2.0:/opt/sw/arch/easybuild/2021b/software/GCCcore/11.2.0/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64:/opt/sw/arch/easybuild/2016b/software/Qt5/5.7.0-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/libGLU/9.0.0-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/Mesa/12.0.2-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/LLVM/3.8.1-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/libdrm/2.4.70-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/nettle/3.2-foss-2016b/lib64:/opt/cecisw/arch/easybuild/2016b/software/X11/20160819-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/fontconfig/2.12.1-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/expat/2.2.0-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/freetype/2.6.5-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/libpng/1.6.24-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/GLib/2.49.5-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/PCRE/8.39-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/gettext/0.19.8-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/libxml2/2.9.4-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/XZ/5.2.2-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/Python/2.7.12-foss-2016b/lib/python2.7/site-packages/numpy-1.11.1-py2.7-linux-x86_64.egg/numpy/core/lib:/opt/cecisw/arch/easybuild/2016b/software/Python/2.7.12-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/libffi/3.2.1-foss-2016b/lib64:/opt/cecisw/arch/easybuild/2016b/software/libffi/3.2.1-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/GMP/6.1.1-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/Tk/8.6.5-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/SQLite/3.13.0-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/Tcl/8.6.5-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/libreadline/6.3-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/ncurses/6.0-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/zlib/1.2.8-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/bzip2/1.0.6-foss-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/opt/cecisw/arch/easybuild/2016b/software/FFTW/3.3.4-gompi-2016b/lib:/opt/cecisw/arch/easybuild/2016b/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/opt/cecisw/arch/easybuild/2016b/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/opt/cecisw/arch/easybuild/2016b/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/opt/cecisw/arch/easybuild/2016b/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/opt/cecisw/arch/easybuild/2016b/software/binutils/2.26-GCCcore-5.4.0/lib:/opt/cecisw/arch/easybuild/2016b/software/GCCcore/5.4.0/lib64:/opt/cecisw/arch/easybuild/2016b/software/GCCcore/5.4.0/lib:/opt/sw/arch/easybuild/2021b/software/GCCcore/11.2.0/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../..



Here is the output of the "ldd cs_solver" command :



linux-vdso.so.1 => (0x00002aaaaaacd000)
libcs_solver-7.0.so => /home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/lib/libcs_solver-7.0.so (0x00002aaaaaad4000)
libsaturne-7.0.so => /home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/lib/libsaturne-7.0.so (0x00002aaaaaccf000)
libple.so.2 => /home/ucl/tfl/grubbers/Code_Saturne/7.0.5/code_saturne-7.0.5/arch/Linux_x86_64/lib/libple.so.2 (0x00002aaaaaadc000)
libmedC.so.11 => /home/ucl/tfl/grubbers/Code_Saturne/7.0.5/med-4.1.0/arch/Linux_x86_64/lib/libmedC.so.11 (0x00002aaaaaaf1000)
libhdf5.so.103 => /home/ucl/tfl/grubbers/Code_Saturne/7.0.5/hdf5-1.10.6/arch/Linux_x86_64/lib/libhdf5.so.103 (0x00002aaaabca1000)
libparmetis.so => /home/ucl/tfl/grubbers/Code_Saturne/7.0.5/parmetis-4.0.3/arch/Linux_x86_64/lib/libparmetis.so (0x00002aaaaac21000)
libmetis.so => /home/ucl/tfl/grubbers/Code_Saturne/7.0.5/parmetis-4.0.3/arch/Linux_x86_64/lib/libmetis.so (0x00002aaaac05f000)
libptscotch.so => /home/ucl/tfl/grubbers/Code_Saturne/7.0.5/scotch-6.1.0/arch/Linux_x86_64/lib/libptscotch.so (0x00002aaaac0cc000)
libscotch.so => /home/ucl/tfl/grubbers/Code_Saturne/7.0.5/scotch-6.1.0/arch/Linux_x86_64/lib/libscotch.so (0x00002aaaac119000)
libz.so.1 => /opt/cecisw/arch/easybuild/2016b/software/zlib/1.2.8-foss-2016b/lib/libz.so.1 (0x00002aaaaaca3000)
libdl.so.2 => /usr/lib64/libdl.so.2 (0x00002aaaac1b2000)
libgfortran.so.3 => /opt/cecisw/arch/easybuild/2016b/software/GCCcore/5.4.0/lib64/../lib64/libgfortran.so.3 (0x00002aaaac3b7000)
libquadmath.so.0 => /opt/cecisw/arch/easybuild/2016b/software/GCCcore/5.4.0/lib64/../lib64/libquadmath.so.0 (0x00002aaaac4d8000)
libm.so.6 => /usr/lib64/libm.so.6 (0x00002aaaac517000)
libmpi.so.12 => /opt/cecisw/arch/easybuild/2016b/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib/libmpi.so.12 (0x00002aaaac81a000)
libgomp.so.1 => /opt/cecisw/arch/easybuild/2016b/software/GCCcore/5.4.0/lib64/../lib64/libgomp.so.1 (0x00002aaaacb8f000)
libpthread.so.0 => /usr/lib64/libpthread.so.0 (0x00002aaaacbb0000)
libc.so.6 => /usr/lib64/libc.so.6 (0x00002aaaacdcd000)
libmpi.so.40 => /home/ucl/tfl/grubbers/opt/openmpi/lib/libmpi.so.40 (0x00002aaaad19b000)
libopen-rte.so.40 => /home/ucl/tfl/grubbers/opt/openmpi/lib/libopen-rte.so.40 (0x00002aaaad4ba000)
libopen-pal.so.40 => /home/ucl/tfl/grubbers/opt/openmpi/lib/libopen-pal.so.40 (0x00002aaaad772000)
librt.so.1 => /usr/lib64/librt.so.1 (0x00002aaaada82000)
libutil.so.1 => /usr/lib64/libutil.so.1 (0x00002aaaadc8b000)
libstdc++.so.6 => /opt/cecisw/arch/easybuild/2016b/software/GCCcore/5.4.0/lib/../lib64/libstdc++.so.6 (0x00002aaaade8e000)
libgcc_s.so.1 => /opt/sw/arch/easybuild/2021b/software/GCCcore/11.2.0/lib/../lib64/libgcc_s.so.1 (0x00002aaaae016000)
/lib64/ld-linux-x86-64.so.2 (0x00002aaaaaaab000)
librdmacm.so.1 => /usr/lib64/librdmacm.so.1 (0x00002aaaae030000)
libibverbs.so.1 => /usr/lib64/libibverbs.so.1 (0x00002aaaae248000)
libpsm2.so.2 => /usr/lib64/libpsm2.so.2 (0x00002aaaae461000)
libfabric.so.1 => /usr/lib64/libfabric.so.1 (0x00002aaaae6c7000)
libopen-rte.so.12 => /opt/cecisw/arch/easybuild/2016b/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib/libopen-rte.so.12 (0x00002aaaaea2c000)
libopen-pal.so.13 => /opt/cecisw/arch/easybuild/2016b/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib/libopen-pal.so.13 (0x00002aaaaeb25000)
libpmi.so.0 => /usr/lib64/libpmi.so.0 (0x00002aaaaebd5000)
libpmi2.so.0 => /usr/lib64/libpmi2.so.0 (0x00002aaaaeddc000)
libhwloc.so.5 => /opt/cecisw/arch/easybuild/2016b/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib/libhwloc.so.5 (0x00002aaaaeff5000)
libnuma.so.1 => /opt/cecisw/arch/easybuild/2016b/software/numactl/2.0.11-GCC-5.4.0-2.26/lib/libnuma.so.1 (0x00002aaaaf02e000)
libnl-route-3.so.200 => /usr/lib64/libnl-route-3.so.200 (0x00002aaaaf03a000)
libnl-3.so.200 => /usr/lib64/libnl-3.so.200 (0x00002aaaaf2a7000)
libpsm_infinipath.so.1 => /usr/lib64/libpsm_infinipath.so.1 (0x00002aaaaf4c9000)
libslurm_pmi.so => /usr/lib64/slurm/libslurm_pmi.so (0x00002aaaaf71f000)
libresolv.so.2 => /usr/lib64/libresolv.so.2 (0x00002aaaafae7000)
libinfinipath.so.4 => /usr/lib64/libinfinipath.so.4 (0x00002aaaafd01000)
libuuid.so.1 => /usr/lib64/libuuid.so.1 (0x00002aaaaff11000)

I will try to use a more recent version of both C and C++.
Thanks a lot for your help,
Gauthier
grubbers
Posts: 3
Joined: Sun Feb 12, 2023 1:36 pm

Re: Error with the solver on a cluster installation

Post by grubbers »

Hello,
I successfully fixed my problem, it appears that the version of the package I was using was outdated. I reloaded them and the simulation worked, thanks a lot for your help !
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