Search found 11 matches

by Puneeth
Thu Sep 24, 2020 9:05 am
Forum: Installation issues
Topic: Installation on cluster
Replies: 13
Views: 7064

Re: Installation on cluster

Hello, Found the bug that generated the error relating to srun. It is from the function to compute n_procs_per_node within the resource_info class at line 1086 in file cs_exec_environment.py. The division operation is not floored (using //) and instead uses "/" which returns a floating poi...
by Puneeth
Wed Sep 23, 2020 2:53 pm
Forum: Installation issues
Topic: Installation on cluster
Replies: 13
Views: 7064

Re: Installation on cluster

Hello, After reinstaling CSv5.1.6, there is a new error relating to the srun command (SLURM Workload Manager). The slurm-jobid.out file contents are as follows: Code_Saturne ************ Version: 5.1 Path: /gpfslocalsup/pub/code-saturne/5.1.6 Result directory: /gpfs7kw/linkhome/rech/genlma01/upz85tg...
by Puneeth
Wed Sep 23, 2020 11:04 am
Forum: Installation issues
Topic: Installation on cluster
Replies: 13
Views: 7064

Re: Installation on cluster

Hello,

The admin recompiled Code-Saturne as per your recommendations and this has fixed the issue!

Thank you very much!

Sincerely,

Puneeth
by Puneeth
Fri Sep 18, 2020 7:59 am
Forum: Installation issues
Topic: Installation on cluster
Replies: 13
Views: 7064

Re: Installation on cluster

Hello,

Please find the config.log attached herewith.

Best regards,

Puneeth
by Puneeth
Thu Sep 17, 2020 8:23 am
Forum: Installation issues
Topic: Installation on cluster
Replies: 13
Views: 7064

Re: Installation on cluster

Hello,

The installation is based on the following modules:
-intel-compilers/19.0.4
-intel-mpi/2019.4
-intel-mkl/2019.4
-hdf5/1.8.21-mpi
-scotch/6.0.6-mpi
-petsc/3.11.3-mpi
-libxml2/2.9.9

Best,

Puneeth
by Puneeth
Wed Sep 16, 2020 3:15 pm
Forum: Installation issues
Topic: Installation on cluster
Replies: 13
Views: 7064

Re: Installation on cluster

Hello, There is also something going wrong with LD_LIBRARY_PATH. The path printed in the summary doesn't correspond to the path printed on the terminal. The terminal output for ">echo $LD_LIBRARY_PATH" is: /gpfslocalsup/spack_soft/scotch/6.0.6/intel-19.0.4-v5fgt76h3qeay6moyrh3w5jmof5kd5mq/...
by Puneeth
Wed Sep 16, 2020 2:17 pm
Forum: Installation issues
Topic: Installation on cluster
Replies: 13
Views: 7064

Re: Installation on cluster

Hello, There has been an update in the situation. The admin has recompiled Code-saturne v5.1.6 considering your recommendations about libxml2. However, the simulations still fail due to another error: "/gpfslocalsup/pub/code-saturne/5.1.6/libexec/code_saturne/cs_preprocess: error while loading ...
by Puneeth
Wed Sep 16, 2020 9:06 am
Forum: Installation issues
Topic: Installation on cluster
Replies: 13
Views: 7064

Re: Installation on cluster

Hi,

Thanks for the reply.

I will confirm with the Cluster admins whether Code_saturne was installed with the libxml2 option enabled. And also for the dev package of libxml2 to be installed.

The simulation is run using a batch file.

Best regards,

Puneeth
by Puneeth
Tue Sep 15, 2020 5:29 pm
Forum: Installation issues
Topic: Installation on cluster
Replies: 13
Views: 7064

Installation on cluster

Hello, While testing a fresh installation of Code-Saturne v5.1.6 on a cluster, I'm facing a Compile or link error shown in slurm-275114.out. The error doesn't provide much info on what is going wrong or where. I kindly request you to assist me in debugging this error. Also, please find the compile.l...
by Puneeth
Fri Jul 17, 2020 2:59 pm
Forum: code_saturne usage
Topic: (CS v5.1.6) Usage of resalp.f90 in turbulence models other than EBRSM or BLv2k
Replies: 2
Views: 2271

Re: (CS v5.1.6) Usage of resalp.f90 in turbulence models other than EBRSM or BLv2k

Hello,

Thank you very much! I followed the subroutine "field_allocate_bc_coeffs" to fldtri.f90 and added a an additional field (nfld += 1 and ifvar(nfld) = ial) for the kwsst model and this works well.

Thanks for guiding me and your recommendations.

Puneeth