command: 
 /home/junichi/opt/code_saturne-3.0.1/libexec/code_saturne/cs_solver --param case1.xml --mpi

***************************************************************

                                  (R)
                      Code_Saturne

                      Version 3.0.1


  Copyright (C) 1998-2013 EDF S.A., France

  build Tue 21 May 2013 07:51:23 PM JST
  MPI version 2.1 (Open MPI 1.4.5)


  The Code_Saturne CFD tool  is free software;
  you can redistribute it and/or modify it under the terms
  of the GNU General Public License as published by the
  Free Software Foundation; either version 2 of the License,
  or (at your option) any later version.

  The Code_Saturne CFD tool is distributed in the hope that
  it will be useful, but WITHOUT ANY WARRANTY; without even
  the implied warranty of MERCHANTABILITY or FITNESS FOR A
  PARTICULAR PURPOSE.  See the GNU General Public License
  for more details.

***************************************************************


Local case configuration:

  Date:                Tue 21 May 2013 08:08:52 PM JST
  System:              Linux 3.2.0-4-amd64
  Machine:             HPCS5000
  Processor:           model name	: Intel(R) Xeon(R) CPU           X5365  @ 3.00GHz
  Memory:              7980 MB
  User:                junichi (Junichi Fukui)
  Directory:           /home/junichi/Code_Saturne/test/CASE1/RESU/20130521-2008
  MPI ranks:           2 (appnum attribute: 0)
  I/O read method:     standard input and output, parallel access
  I/O write method:    standard input and output, serial access
  I/O rank step:        1

  External libraries for partitioning:
    PT-SCOTCH 1.12.-1116345528

 Reading metadata from file: "mesh_input"

===============================================================

                   CALCULATION PREPARATION
                   =======================


 ===========================================================




 No error detected during the data verification
                          cs_user_parameters.f90 and others).


 ===========================================================

               CALCULATION PARAMETERS SUMMARY
               ==============================

 -----------------------------------------------------------


 ** DIMENSIONS
    ----------

 --- Geometry
       NPRFML =              1 (Nb max. family properties   )
       NFML   =             11 (Nb families                 )

 --- Physics
       NVAR   =              7 (Nb variables                )
       NSCAL  =              1 (Nb scalars                  )
       NSCAUS =              1 (Nb user scalars             )
       NSCAPP =              0 (Nb specific physics scalars )
       NPROCE =              6 (Nb cell properties          )
       NPROFA =              1 (Nb internal face properties )
       NPROFB =              2 (Nb boundary face properties )


 -----------------------------------------------------------


 ** PHYSICAL PROPERTIES
    -------------------

       GX     =    0.00000E+00 (Gravity x component         )
       GY     =    0.00000E+00 (Gravity y component         )
       GZ     =    0.00000E+00 (Gravity z component         )

       OMEGAX =    0.00000E+00 (Rotation vector x component )
       OMEGAY =    0.00000E+00 (Rotation vector y component )
       OMEGAZ =    0.00000E+00 (Rotation vector z component )
       ICORIO =          0 (Coriolis source terms       )

  -- Continuous phase:

       RO0    =    0.72574E+03 (Reference density           )
       VISCL0 =    0.89510E-04 (Ref. molecular dyn. visc.   )
       CP0    =    0.54830E+04 (Ref. specific heat          )
       ICP    =              0 (> 0: variable CP (usphyv)   )
       P0     =    0.10133E+06 (Ref. total pressure         )
       PRED0  =    0.00000E+00 (Ref. reduced pressure       )
       T0     =    0.29315E+03 (Ref. temperature            )

       IROVAR =              0 (Density constant(0) or not(1)
       IVIVAR =              0 (Molec. visc cst.(0) or not(1)

       Initial reference point for pressure
       XYZP0  =    0.00000E+00   0.00000E+00   0.00000E+00

 -----------------------------------------------------------


 ** TURBULENCE
    ----------

 --- Continuous phase:

   - Commons
       ITURB  =             21 (Turbulence model            )
       IDEUCH =              1 (0: one-scale model          )
                               (1: two-scale model          )
                               (2: invariant wall function  )
       IWALLT =              0 (Exch. coeff. correlation    )
                               (0: not activated            )
                               (1: activated                )
       YPLULI =    0.23810E+01 (Limit Y+                    )
       ILOGPO =              1 (0: power law (forbidden for
                                              k-epsilon)    )
                               (1: one-scale log law        )
       IGRHOK =              0 (1: computed Grad(rho k)     )
       ISCALT =              1 (Temperature salar number    )

   - Linear production k-epsilon (ITURB = 21)
       ALMAX  =   -0.99900E+03 (Characteristic length       )
       UREF   =    0.10000E+01 (Characteristic velocity     )
       ICLKEP =              0 (k-epsilon clipping model    )
       IKECOU =              0 (k-epsilon coupling mode     )
       IGRAKE =              1 (Account for gravity         )


   - Rotation/curvature correction
       IRCCOR =              0 (0: desactivated             )
                               (1: activated                )

 --- Constants

   - Commons
       XKAPPA =    0.42000E+00 (Von Karman constant         )
       CSTLOG =    0.52000E+01 (U+=Log(y+)/kappa +CSTLOG    )
       APOW   =    0.83000E+01 (U+=APOW (y+)**BPOW (W&W law))
       BPOW   =    0.14286E+00 (U+=APOW (y+)**BPOW (W&W law))

   - Linear production k-epsilon (ITURB = 21)
       Ce1    =    0.14400E+01 (Cepsilon 1: production coef.)
       CE2    =    0.19200E+01 (Cepsilon 2: dissipat.  coef.)
       SIGMAK =    0.10000E+01 (Prandtl relative to k       )
       SIGMAE =    0.13000E+01 (Prandtl relative to epsilon )
       CMU    =    0.90000E-01 (Cmu constant                )


 -----------------------------------------------------------


 ** SECONDARY VISCOSITY
    -------------------

 --- Continuous phase:
       IVISSE =              1 (1: accounted for            )


 -----------------------------------------------------------


 ** TIME STEPPING
    -------------

    STEADY ALGORITHM

 --- Global parameters

       IDTVAR =             -1 (-1: steady algorithm        )
       RELXST =    0.90000E+00 (Reference relaxation coeff. )


 --- Frozen velocity field

       ICCVFG =              0 (1: frozen velocity field    )

 --- Per variable relaxation coefficient

-----------------------------
 Variable          RELAXV
-----------------------------
 Pressure          0.1000E+00
 VelocityX         0.9000E+00
 VelocityY         0.9000E+00
 VelocityZ         0.9000E+00
 TurbEner          0.9000E+00
 Dissip            0.9000E+00
 TempC             0.9000E+00
----------------------------

       RELAXV =  [0.,1.]       (relaxation coefficient      )


 -----------------------------------------------------------


 ** CONVECTION - DIFFUSION
    ----------------------

---------------------------------------------------------------------
 Variable          ICONV  IDIFF IDIFFT ISCHCV ISSTPC   BLENCV  THETAV
---------------------------------------------------------------------
 Pressure              0      1      1      1      0 0.00E+00 0.10E+01
 VelocityX             1      1      1      1      0 0.10E+01 0.10E+01
 VelocityY             1      1      1      1      0 0.10E+01 0.10E+01
 VelocityZ             1      1      1      1      0 0.10E+01 0.10E+01
 TurbEner              1      1      1      1      0 0.00E+00 0.10E+01
 Dissip                1      1      1      1      0 0.00E+00 0.10E+01
 TempC                 1      1      1      1      0 0.10E+01 0.10E+01
-------------------------------------------------------------

       ICONV  =  0 ou  1       (1 for convection active     )
       IDIFF  =  0 ou  1       (1 for total diffusion active)
       IDIFFT =  0 ou  1       (1 for turbulent diff. active)
       ISCHCV =  0 ou  1       (SOLU or CD                  )
       ISSTPC =  0 ou  1       (1: no slope test            )
       BLENCV =  [0.;1.]       (1-upwind proportion         )
       THETAV =  [0.;1.]       (0.5 Crank-Nicolson/AB       )
                               (theta for convection-       )
                               (diffusion terms uses        )
                               ((1-theta).old+theta.new     )


 -----------------------------------------------------------


 ** STOKES
    ------
       IVELCO =              1 (0: segregated solving of the
                                   velocity components during
                                   the prediction step
                                1: coupled solving of the
                                   velocity components       )
       IPHYDR =              0 (1: account for explicit
                                   balance between pressure
                                   gradient, gravity source
                                   terms, and head losses     )
       ICALHY =              0 (1: compute hydrastatic
                                   pressure for Dirichlet
                                   conditions for pressure
                                   on outlet                  )
       IPRCO  =              1 (1: pressure-continuity        )
       IPUCOU =              0 (1: reinforced U-P coupling    )
       NTERUP =              1 (n: n sweeps on navsto for
                                   velocity/pressure coupling )

  -- Continuous phase:

       IREVMC =              0 (Velocity reconstruction mode)

       ARAK   =    0.10000E+01 (Arakawa factor              )

       ISTMPF =              1 (time scheme for flow
                               (0: explicit (THETFL = 0     )
                               (1: std scheme (Saturne 1.0  )
                               (2: 2nd-order (THETFL = 0.5  )
       THETFL =   -0.99900E+03 (theta for mass flow         )
       IROEXT =              0 (density extrapolation
                               (0: explicit
                               (1: n+thetro with thetro=1/2
                               (2: n+thetro with thetro=1
       THETRO =    0.00000E+00 (theta for density
                               ((1+theta).new-theta.old
       IVIEXT =              0 (total viscosity extrapolation
                               (0: explicit
                               (1: n+thetvi with thetro=1/2
                               (2: n+thetvi with thetro=1
       THETVI =    0.00000E+00 (theta for total viscosity
                               ((1+theta).new-theta.old
       ICPEXT =              0 (specific heat extrapolation
                               (0: explicit
                               (1: n+thetcp with thetro=1/2
                               (2: n+thetcp with thetro=1
       THETCP =    0.00000E+00 (specific heat theta-scheme
                               ((1+theta).new-theta.old
       THETSN =    0.00000E+00 (Nav-Stokes S.T. theta scheme)
                               ((1+theta).new-theta.old
       THETST =    0.00000E+00 (Turbulence S.T. theta-scheme)
                               ((1+theta).new-theta.old
       EPSUP  =    0.10000E-04 (Velocity/pressure coupling
                                stop test                   )


 -----------------------------------------------------------


 ** GRADIENTS CALCULATION
    ---------------------

       IMRGRA =              0 (Reconstruction mode         )
       ANOMAX =    0.78540E+00 (Non-ortho angle: limit for  )
                               (least squares ext. neighbors)

-------------------------------------------------------------------
 Variable         NSWRGR NSWRSM      EPSRGR      EPSRSM      EXTRAG
-------------------------------------------------------------------
 Pressure            100      2  0.1000E-04  0.1000E-06  0.0000E+00
 VelocityX           100      1  0.1000E-04  0.1000E-06  0.0000E+00
 VelocityY           100      1  0.1000E-04  0.1000E-06  0.0000E+00
 VelocityZ           100      1  0.1000E-04  0.1000E-06  0.0000E+00
 TurbEner            100      1  0.1000E-04  0.1000E-06  0.0000E+00
 Dissip              100      1  0.1000E-04  0.1000E-06  0.0000E+00
 TempC               100      1  0.1000E-04  0.1000E-06  0.0000E+00
-----------------------------------------------------------

-------------------------------------------
 Variable         IRCFLU IMLIGR      CLIMGR
-------------------------------------------
 Pressure              1     -1  0.1500E+01
 VelocityX             1     -1  0.1500E+01
 VelocityY             1     -1  0.1500E+01
 VelocityZ             1     -1  0.1500E+01
 TurbEner              1     -1  0.1500E+01
 Dissip                1     -1  0.1500E+01
 TempC                 1     -1  0.1500E+01
-----------------------------------

       NSWRGR =                (nb sweep gradient reconstr. )
       NSWRSM =                (nb sweep rhs reconstrcution )
       EPSRGR =                (grad. reconstruction prec.  )
       EPSRSM =                (rhs   reconstruction prec.  )
       EXTRAG =  [0.;1.]       (gradients extrapolation     )
       IRCFLU =  0 ou  1       (flow reconstruction         )
       IMLIGR =  < 0, 0 ou 1   (gradient limitation method  )
       CLIMGR =  > 1 ou 1      (gradient limitation coeff.  )


 -----------------------------------------------------------


 ** FACE INTERPOLATION
    ------------------
       IMVISF =              0 (0 arithmetic                )


 -----------------------------------------------------------


 ** CALCULATION OF TEMPORAL MEANS (MOMENTS)
    ---------------------------------------

       NBMOMT =              0 (Number of moments           )

 -----------------------------------------------------------


 ** BASE ITERATIVE SOLVERS
    ----------------------

--------------------------------------------------
 Variable         IRESOL NITMAX      EPSILO IDIRCL
--------------------------------------------------
 Pressure              0  10000  0.1000E-07      1
 VelocityX            -1  10000  0.1000E-07      1
 VelocityY            -1  10000  0.1000E-07      1
 VelocityZ            -1  10000  0.1000E-07      1
 TurbEner             -1  10000  0.1000E-07      1
 Dissip               -1  10000  0.1000E-07      1
 TempC                -1  10000  0.1000E-07      1
-----------------------------------

       IRESOL =            -1  (automatic solver choice     )
                IPOL*1000 + 0  (p conjuguate gradient       )
                            1  (Jacobi                      )
                IPOL*1000 + 2  (bicgstab                    )
                  avec IPOL    (preconditioning degree      )
       NITMAX =                (max number of iterations    )
       EPSILO =                (resolution precision        )
       IDIRCL = 0 ou 1         (shift diagonal if   
                                ISTAT=0 and no Dirichlet    )


 -----------------------------------------------------------


 ** MULTIGRID
    ---------

       NCEGRM =             30 (Max nb cells coarsest grid  )
       NGRMAX =             25 (Max number of levels        )
--------------------------------------
 Variable           IMGR NCYMAX NITMGF
--------------------------------------                       
 Pressure              1    100     10
 VelocityX             0    100     10
 VelocityY             0    100     10
 VelocityZ             0    100     10
 TurbEner              0    100     10
 Dissip                0    100     10
 TempC                 0    100     10
------------------------------

       IMGR   =  0 ou 1        (1: multigrid activated      )
       NCYMAX =                (Max number  of cycles       )
       NITMGF =                (Max nb iter on coarsest grid)


  Multigrid rank merge parameters:
    mean  coarse cells merge threshold: 300
    total coarse cells merge threshold: 500
    minimum ranks merge threshold:      1
    merge stride:                       1

  Multigrid coarsening type: algebraic, face traveral by criteria

 -----------------------------------------------------------


 ** SCALARS
    -------

       ITBRRB =              0 (T or H reconstruction at bdy)

---------------------------------------------------------------------
 Variable         Number ISCSTH IVISLS  ITURT      VISLS0      SIGMAS
---------------------------------------------------------------------
 TempC                 1     -1      0      0  0.2495E-01  0.1000E+01
---------------------------------------------------------------------

-------------------------------------------
 Variable         Number ISCAVR      RVARFL
-------------------------------------------
 TempC                 1      0  0.8000E+00
-------------------------------------------

-------------------------------------------------------
 Variable         Number ICLVFL      SCAMIN      SCAMAX
-------------------------------------------------------
 TempC                 1     -1  0.2000E+02  0.4000E+03
-------------------------------------------------------

-------------------------------------------------------------

       For each scalar, the number indicates it's rank
         in the list of all scalars. User scalars are placed
         first, from 1 to NSCAUS. Specific physics scalars
         are placed at the end, from
         NSCAUS+1 to NSCAPP+NSCAUS=NSCAL.

       ISCSTH = -1,0, 1 ou 2   (T (C), Passive, T (K) or H  )
       IVISLS = 0 ou >0        (Viscosity: constant or not  )
       VISLS0 = >0             (Reference viscosity         )
       SIGMAS = >0             (Schmidt                     )
       ISCAVR = 0 ou >0        (Associat. scalar if variance)
       RVARFL = >0             (Rf, cf variance dissipation )
       ICLVFL = 0, 1 ou 2      (Variance clipping mode      )
       SCAMIN =                (Min authorized value        )
       SCAMAX =                (Max authorized value        )
        For variances, SCAMIN is ignored and SCAMAX is used
          only if ICLVFL = 2

------------------------------------------------------
   Scalar        THETSS    IVSEXT      THETVS
------------------------------------------------------
          1  0.0000E+00         0  0.0000E+00
------------------------------------------------------

       THETSS =                (theta for source terms      )
                               ((1+theta).new-theta.old     )
       IVSEXT =                (extrap. total viscosity     )
                               (0: explicit                 )
                               (1: n+thetvs with thetvs=1/2 )
                               (2: n+thetvs with thetvs=1   )
       THETVS =                (theta for scalar diffusivity
                               ((1+theta).new-theta.old     )


 -----------------------------------------------------------


 ** CALCULATION MANAGEMENT
    ----------------------

 --- Restarted calculation
       ISUITE =              0 (1: restarted calculation    )
       ILEAUX =              1 (1: read  restart/auxiliary  )
       IECAUX =              1 (1: write checkpoint/auxiliary)


 --- Calculation time
     The numbering of time steps and the measure of simulated
       physical time are absolute values, and not values
       relative to the current calculation.

       INPDT0 =              0 (1: 0 time step calcuation   )
       NTMABS =            300 (Final time step required    )

 --- CPU time margin
       TMARUS =   -0.10000E+01 (CPU time margin before stop )


 -----------------------------------------------------------


 ** INPUT-OUTPUT
    ------------

 --- Restart file
       NTSUIT =              0 (Checkpoint frequency )

 --- Post-processed variables

       Number Name
         2 Pressure        
         3 VelocityX       
         4 VelocityY       
         5 VelocityZ       
         6 TurbEner        
         7 Dissip          
         8 TempC           
        11 TurbVisc        
        14 total_pressure  
         --           --

 --- Probe history files
       NTHIST =             -1 (Output frequency     )
       FRHIST =     -.10000E+01 (Output frequency (s) )
       NCAPT  =              0 (Number of probes     )
       NTHSAV =             -1 (Checkpoint frequency )

       Number Name                  Nb. probes (-1: all)
         2 Pressure                      -1
         3 VelocityX                     -1
         4 VelocityY                     -1
         5 VelocityZ                     -1
         6 TurbEner                      -1
         7 Dissip                        -1
         8 TempC                         -1
         9 Density                       -1
        10 LamVisc                       -1
        11 TurbVisc                      -1
        14 total_pressure                -1
         --           --                --

 --- Log files
       NTLIST =              1 (Output frequency     )

       Number Name                IWARNI verbosity level
                                      (-999: not applicable)

         2 Pressure                       0
         3 VelocityX                      0
         4 VelocityY                      0
         5 VelocityZ                      0
         6 TurbEner                       0
         7 Dissip                         0
         8 TempC                          0
        11 TurbVisc                    -999
        14 total_pressure              -999
         --           --                --

 --- Additional post-processing variables (ipstdv)
       ipstfo =              1 (Force exerted  at boundary)
       ipstyp =              1 (Yplus          at boundary)
       ipstft =              1 (Thermal flow   at boundary)
       ipsttb =              1 (Temperature    at boundary)
       ipstnu =              0 (Nusselt        at boundary)


 -----------------------------------------------------------


 ** ALE METHOD (MOVING MESH)
    -----------

       IALE   =              0 (1: activated                )
       NALINF =              0 (Fluid initialization
                                                  iterations)


 -----------------------------------------------------------


 Reading file:        mesh_input
 Finished reading:    mesh_input
 No "partition_input/domain_number_2" file available;

 ----------------------------------------------------------

 Partitioning 700 cells to 2 domains on 2 ranks
   (SCOTCH_dgraphPart).
SIGSEGV signal (forbidden memory area access) intercepted!

Call stack:
   1: 0x7f99bb3c5f86 <MPI_Comm_size+0x56>             (libmpi.so.0)
   2: 0x7f99bc2348e1 <_SCOTCHdgraphInit+0x71>         (libptscotch-5.1.so)
   3: 0x7f99bd4df6c9 <cs_partition+0x62b9>            (libsaturne.so.0)
   4: 0x7f99bd251f54 <cs_preprocessor_data_read_mesh+0x274> (libsaturne.so.0)
   5: 0x7f99bd1c3b88 <cs_run+0x238>                   (libsaturne.so.0)
   6: 0x7f99bd1c383a <main+0x14a>                     (libsaturne.so.0)
   7: 0x7f99ba52cead <__libc_start_main+0xfd>         (libc.so.6)
   8: 0x400829     <>                               (cs_solver)
End of stack

