code_saturne is running *********************** Version: 2.3.1 Path: /home/malodpan/saturne_V2R3P1/code_saturne-2.3.1 Result directory: /home/malodpan/Study/SaturneCompressible/CASE1/RESU/20120730-1401 Parallel code_saturne on 6 processes. **************************** Preparing calculation data **************************** *************************** Preprocessing calculation *************************** ********************** Starting calculation ********************** /home/malodpan/Study/SaturneCompressible/CASE1/RESU/20120730-1401/run_solver.sh[10]: module: not found [No such file or directory] command: /home/malodpan/saturne_V2R3P1/code_saturne-2.3.1/libexec/code_saturne/cs_solver --param SaturneCompressible --log 0 --mpi *************************************************************** (R) Code_Saturne Version 2.3.1 Copyright (C) 1998-2012 EDF S.A., France build Mon 30 Jul 2012 01:05:47 PM CST MPI version 2.1 (Open MPI 1.6.0) The Code_Saturne CFD tool is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. The Code_Saturne CFD tool is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. *************************************************************** Local case configuration: Date: Mon 30 Jul 2012 02:01:32 PM CST System: Linux 2.6.32-71.el6.x86_64 Machine: cnshacal0028 Processor: model name : Intel(R) Xeon(R) CPU X5677 @ 3.47GHz Memory: 36141 MB User: malodpan () Directory: /home/malodpan/Study/SaturneCompressible/CASE1/RESU/20120730-1401 MPI ranks: 6 (appnum attribute: 0) Reading metadata from file: "mesh_input" =============================================================== CALCULATION PREPARATION ======================= =========================================================== /tmp/saturne-2.3.1/installer/code_saturne-2.3.1/src/mesh/cs_mesh_quantities.c:1663: Fatal error. The option selection indicator for the cocg computation for vector gradients can take the following values: 0: do not compute cocg dimensionless matrices 1: compute cocg matrices and not 0. Call stack: 1: 0x7fe84e6e6c01 (libsaturne.so.0) 2: 0x7fe84e6e6c40 (libsaturne.so.0) 3: 0x7fe84e4ef417 (libsaturne.so.0) 4: 0x7fe84e4ee533 (libsaturne.so.0) 5: 0x7fe84e428615 (libsaturne.so.0) 6: 0x7fe84e428915 (libsaturne.so.0) 7: 0x3b2041ec5d <__libc_start_main+0xfd> (libc.so.6) 8: 0x400789 <> (cs_solver) End of stack **************************** Saving calculation results **************************** -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 1. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- -------------------------------------------------------------------------- mpiexec has exited due to process rank 0 with PID 25581 on node cnshacal0028 exiting improperly. There are two reasons this could occur: 1. this process did not call "init" before exiting, but others in the job did. This can cause a job to hang indefinitely while it waits for all processes to call "init". By rule, if one process calls "init", then ALL processes must call "init" prior to termination. 2. this process called "init", but exited without calling "finalize". By rule, all processes that call "init" MUST call "finalize" prior to exiting or it will be considered an "abnormal termination" This may have caused other processes in the application to be terminated by signals sent by mpiexec (as reported here). -------------------------------------------------------------------------- solver script exited with status 1. Error running the calculation. Check code_saturne log (listing) and error* files for details. Error in calculation stage.